Nextflow workflow report

[shrivelled_keller] (resumed run)

Workflow execution completed successfully!
Run times
15-Jun-2023 19:45:09 - 15-Jun-2023 22:47:49 (duration: 3h 2m 40s)
  670 succeeded  
  71 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run nf-core/sarek -resume magical_gautier --input contemporary_samples.csv -profile uppmax --project naiss2023-5-52 --fasta /crex/proj/uppstore2017185/b2014034_nobackup/Dasha/M.britomartis_Conservation/reference_genome_M.athalia/GCA_905220545.2_ilMelAtha1.2_genomic.chroms.fna --skip_tools baserecalibrator --outdir ./results
CPU-Hours
1'536.4 (1.9% cached)
Launch directory
/crex/proj/uppstore2017185/b2014034_nobackup/Dasha/M.britomartis_Conservation/00_Mapping_Calling_sarek/01_MappingAll
Work directory
/crex/proj/uppstore2017185/b2014034_nobackup/Dasha/M.britomartis_Conservation/00_Mapping_Calling_sarek/01_MappingAll/work
Project directory
/crex/proj/uppstore2017185/b2014034_nobackup/Dasha/M.britomartis_Conservation/00_Mapping_Calling_sarek/01_MappingAll/assets/nf-core/sarek
Script name
main.nf
Script ID
c2275107d1eafbc01b31ce8cf99ccbd7
Workflow session
16d82baf-44e4-4fc0-9190-58b776b40333
Workflow repository
https://github.com/nf-core/sarek, revision master (commit hash c87f4eb694a7183e4f99c70fca0f1d4e91750b33)
Workflow profile
uppmax
Nextflow version
version 22.10.2, build 5832 (13-11-2022 18:13 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)